Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021911.1 Corchorus olitorius cultivar O-4 contig21944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1117
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32


Found at i:1032 original size:9 final size:9

Alignment explanation


    Indices: 1010--1048  Score: 51
    Period size: 9  Copynumber: 4.2  Consensus size: 9

       1000 CAACTTCTCC

                     
       1010 AAAAATTTG
          1 AAAAATTTG

                      
       1019 AAAAACTTTG
          1 AAAAA-TTTG

                     
       1029 AAAAATTTG
          1 AAAAATTTG

             **      
       1038 AGGAATTTG
          1 AAAAATTTG

              
       1047 AA
          1 AA

       1049 TGGAAAAAGG


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
   9   17  0.65
  10    9  0.35

ACGTcount: A:0.51, C:0.03, G:0.15, T:0.31


Consensus pattern (9 bp):   
AAAAATTTG
Done.