Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021915.1 Corchorus olitorius cultivar O-4 contig21948, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6956

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34--80
25
1.9
24
95
4
85
55
8
6
29
1.55
71--151
39
2.0
40
92
2
137
37
3
8
50
1.51
368--404
6
5.8
6
90
9
56
48
0
13
37
1.43
368--404
13
2.9
13
96
4
67
48
0
13
37
1.43
735--780
24
2.0
23
95
4
83
54
8
6
30
1.56
771--851
39
2.0
40
92
2
137
37
3
8
50
1.51
2354--2422
20
3.3
20
76
15
68
47
10
18
23
1.79
2366--2529
22
7.6
23
73
16
82
41
8
14
35
1.76
2470--2550
22
3.7
22
85
1
110
39
6
11
43
1.65

Tables:   1

The End!