Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021917.1 Corchorus olitorius cultivar O-4 contig21950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33574

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57--82
2
13.0
2
100
0
52
50
0
0
50
1.00
3318--3350
16
1.9
18
88
11
52
63
12
6
18
1.48
5955--6448
22
22.6
22
68
15
165
36
14
9
38
1.80
6223--6325
46
2.3
47
85
6
133
40
14
8
35
1.77
6246--6405
82
1.9
82
81
7
189
36
16
8
38
1.79
6291--6364
38
1.9
39
86
8
107
37
16
8
37
1.78
6602--6673
22
3.3
23
81
11
80
34
13
9
41
1.78
6845--6983
22
6.4
22
74
13
128
35
19
8
35
1.83
7001--7220
22
9.9
22
71
11
112
38
17
9
35
1.82
7002--7213
66
3.2
65
77
10
205
38
16
9
35
1.82
7383--7421
20
2.0
20
85
10
53
64
5
5
25
1.35
8590--8919
164
2.0
164
94
1
581
43
7
10
39
1.67
10659--12391
865
2.0
865
97
0
3261
31
15
24
28
1.96
19077--19136
11
5.5
11
76
11
52
50
1
0
48
1.11
26212--26272
28
2.1
29
87
6
88
37
31
8
22
1.84
32348--32490
49
3.0
48
80
9
164
28
15
5
50
1.66
33023--33128
18
5.9
18
87
0
140
26
38
21
13
1.90

Tables:   1

The End!