Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002192.1 Corchorus olitorius cultivar O-4 contig02192, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1045
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.38


Found at i:411 original size:37 final size:37

Alignment explanation


    Indices: 341--414  Score: 96
    Period size: 37  Copynumber: 2.0  Consensus size: 37

        331 ACACCATTAG

                         *          * *          
        341 ATCTAAGCCTAAAGAAAGACTTTTTATTCCCAAACTT
          1 ATCTAAGCCTAAACAAAGACTTTTGAATCCCAAACTT

                           *                      
        378 ATCTAAGCCTAAACAGAGAC-TTTGAATCACCAAACTT
          1 ATCTAAGCCTAAACAAAGACTTTTGAATC-CCAAACTT

        415 TCTCTTTCTT


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  36    6  0.19
  37   26  0.81

ACGTcount: A:0.39, C:0.23, G:0.09, T:0.28


Consensus pattern (37 bp):   
ATCTAAGCCTAAACAAAGACTTTTGAATCCCAAACTT
Done.