Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021923.1 Corchorus olitorius cultivar O-4 contig21956, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44199

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1277--1389
58
1.9
58
85
3
156
36
14
16
32
1.89
2621--2691
36
2.0
36
91
0
115
21
9
8
60
1.54
3204--3613
204
2.0
201
96
1
757
44
8
10
36
1.70
3723--3811
39
2.3
39
88
5
126
39
4
8
47
1.55
7872--7898
4
6.8
4
100
0
54
51
22
0
25
1.48
10633--10687
29
1.9
28
85
3
74
45
21
3
29
1.69
12391--12476
27
3.2
27
73
6
75
12
29
5
52
1.63
12402--12477
27
2.8
27
74
7
82
10
27
6
55
1.59
14253--14290
16
2.3
17
86
4
51
39
0
47
13
1.42
15573--16679
553
2.0
553
99
0
2169
27
21
15
35
1.94
18987--19046
21
2.9
21
77
5
68
13
20
8
58
1.60
25750--25795
10
4.6
10
91
0
74
39
21
6
32
1.79
25985--26022
18
2.2
17
90
4
58
42
0
26
31
1.56
25985--26022
9
4.3
9
83
3
51
42
0
26
31
1.56
28395--28419
9
2.8
9
100
0
50
80
0
0
20
0.72
28581--28636
25
2.3
24
84
3
67
30
19
12
37
1.89
28774--28833
27
2.2
27
96
0
111
50
6
0
43
1.28
36444--36498
27
2.0
27
96
0
101
49
7
14
29
1.70

Tables:   1

The End!