Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021927.1 Corchorus olitorius cultivar O-4 contig21960, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3016
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:1007 original size:49 final size:49

Alignment explanation


    Indices: 932--1060  Score: 192
    Period size: 49  Copynumber: 2.7  Consensus size: 49

        922 CAAGCAATCC

                                              **             
        932 TTTACTTTTTAC-TGCACTTTTTCTCAATTTTTACTACAAAATTGAACT
          1 TTTACTTTTTACTTGCACTTTTTCTCAATTTTTAAGACAAAATTGAACT

                                                           *  
        980 TTTA-TTTTTACTTGCATCTTTTTCTCAATTTTTAAGACAAAATTGATCT
          1 TTTACTTTTTACTTGCA-CTTTTTCTCAATTTTTAAGACAAAATTGAACT

                                   *         
       1029 TTTACTTTTTA-TTGCACTTTTTATCAATTTTT
          1 TTTACTTTTTACTTGCACTTTTTCTCAATTTTT

       1061 GGATAAAATT


Statistics
Matches: 74,  Mismatches: 4, Indels: 6
        0.88            0.05        0.07

Matches are distributed among these distances:
  47    7  0.09
  48   23  0.31
  49   38  0.51
  50    6  0.08

ACGTcount: A:0.25, C:0.16, G:0.05, T:0.55


Consensus pattern (49 bp):   
TTTACTTTTTACTTGCACTTTTTCTCAATTTTTAAGACAAAATTGAACT
Done.