Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021929.1 Corchorus olitorius cultivar O-4 contig21962, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18268

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3074--3192
41
2.9
41
86
2
159
49
11
11
26
1.74
3340--3382
22
1.9
23
85
4
61
44
4
18
32
1.71
3340--3394
22
2.4
23
78
9
58
47
3
20
29
1.67
5772--5869
27
3.7
27
75
2
90
37
26
16
19
1.92
6114--6186
26
2.7
27
75
12
78
26
26
12
35
1.91
6093--6206
53
2.2
52
84
4
140
23
27
14
35
1.93
6489--6864
193
2.0
192
84
1
502
28
22
15
34
1.94
6467--6876
64
6.4
64
86
2
500
28
22
14
33
1.94
6506--6889
129
3.0
125
81
8
443
27
22
15
34
1.94
6490--6957
193
2.4
191
79
5
428
27
22
14
35
1.93
6883--7248
67
5.4
67
89
1
518
25
21
13
39
1.90
10542--10586
22
2.1
22
84
12
58
46
17
8
26
1.78

Tables:   1

The End!