genome.fa.s21930.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021930.1 Corchorus olitorius cultivar O-4 contig21963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71950

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615--696	43	1.9	42	82	7	103	29	26	3	40	1.73
1075--1101	14	1.9	14	100	0	54	37	7	14	40	1.74
6847--7024	92	2.0	89	83	4	214	26	19	14	38	1.91
7099--7943	50	16.9	50	91	0	1285	30	27	13	28	1.94
8247--8351	28	3.8	27	81	6	113	20	20	20	38	1.94
15782--15840	27	2.2	28	79	14	70	13	15	5	66	1.42
19268--19329	27	2.3	27	85	0	88	14	14	29	41	1.85
26609--26646	15	2.6	14	91	4	58	2	7	21	68	1.28
28460--28485	13	2.0	13	100	0	52	15	23	0	61	1.33
29210--29263	21	2.7	20	85	8	65	79	18	1	0	0.82
30922--31053	69	1.9	67	92	3	219	27	26	16	29	1.97
31094--31230	69	2.0	69	92	0	229	27	28	18	25	1.98
30922--31337	172	2.4	173	91	1	665	28	27	16	28	1.97
31094--31246	69	2.2	69	89	0	216	28	27	16	27	1.97
31369--31558	35	5.4	35	95	1	319	27	19	24	27	1.99
34772--34899	41	3.1	40	77	6	132	24	14	13	47	1.80
34792--34924	41	3.3	40	81	6	146	24	11	12	51	1.73
39588--39702	59	1.9	58	89	3	176	29	13	13	42	1.84
42038--42257	41	5.4	41	91	0	350	25	15	13	45	1.82
42038--42290	82	3.1	82	86	3	260	27	13	13	45	1.82
42038--42290	123	2.1	123	84	4	332	27	13	13	45	1.82
45670--45729	30	2.0	30	87	6	86	20	36	18	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46106--46140	18	1.9	18	94	0	61	31	5	28	34	1.81
47650--47699	15	3.3	15	72	5	55	52	4	22	22	1.64
47646--47728	31	2.7	30	87	7	114	50	8	19	21	1.73
60086--60148	30	2.1	30	88	5	92	30	15	34	19	1.93
70820--70855	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!