Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021932.1 Corchorus olitorius cultivar O-4 contig21965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27140

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5578--5666
32
2.9
30
81
6
106
23
19
8
48
1.77
5576--5657
32
2.6
31
86
3
112
23
19
8
48
1.76
12768--12872
48
2.2
48
94
1
185
15
2
34
47
1.60
13406--13496
44
2.1
44
93
4
157
24
13
16
46
1.82
15611--15689
26
3.0
26
73
10
88
24
24
11
40
1.87
15708--15788
23
3.3
23
65
18
65
20
29
11
38
1.88
15671--15893
50
4.4
50
93
2
349
24
27
12
35
1.92
15671--15893
101
2.2
101
91
3
351
24
27
12
35
1.92
16580--16619
2
20.0
2
100
0
80
50
0
0
50
1.00
17761--17814
26
2.1
26
83
10
67
35
11
1
51
1.48
18600--18695
41
2.3
41
85
3
131
43
14
16
25
1.86
18762--18904
41
3.5
41
89
1
171
45
13
14
25
1.83
21184--21244
27
2.2
27
88
2
86
39
26
14
19
1.90
21493--21701
51
4.1
51
91
0
339
27
24
11
37
1.89
22445--22636
50
3.8
50
87
1
251
36
13
16
33
1.88
23242--23299
6
9.7
6
75
17
50
17
0
15
67
1.24
23254--23299
19
2.5
19
82
6
60
17
0
15
67
1.24
25262--25336
29
2.6
28
83
8
98
41
24
13
21
1.88
25729--25789
28
2.2
28
96
0
113
24
3
18
54
1.58

Tables:   1

The End!