Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021934.1 Corchorus olitorius cultivar O-4 contig21967, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2493
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29


Found at i:1936 original size:20 final size:20

Alignment explanation


    Indices: 1911--1953  Score: 77
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       1901 CCTTGGGACC

                                
       1911 TTTATTTTCCAAAACCTTCT
          1 TTTATTTTCCAAAACCTTCT

                          *     
       1931 TTTATTTTCCAAAATCTTCT
          1 TTTATTTTCCAAAACCTTCT

               
       1951 TTT
          1 TTT

       1954 GGGATTTTTC


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.23, C:0.21, G:0.00, T:0.56


Consensus pattern (20 bp):   
TTTATTTTCCAAAACCTTCT
Done.