Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021937.1 Corchorus olitorius cultivar O-4 contig21970, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59368

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111--173
29
2.2
29
88
2
92
44
11
17
26
1.82
1081--1164
41
2.0
41
93
4
143
36
10
20
32
1.87
3091--3156
31
2.2
30
83
5
80
36
13
18
31
1.90
4173--4210
2
19.0
2
100
0
76
50
0
0
50
1.00
4606--4660
2
30.5
2
76
20
59
49
0
0
50
1.00
10814--10894
39
2.1
39
92
0
135
35
16
8
39
1.79
12946--13006
19
3.2
18
70
20
52
36
18
3
42
1.66
17784--17809
8
3.2
8
100
0
52
53
11
0
34
1.37
23468--23504
19
2.0
19
89
5
58
64
0
0
35
0.94
37381--37410
12
2.4
13
88
11
53
13
6
13
66
1.43
37621--37652
16
1.9
17
93
6
57
9
9
0
81
0.88
47435--47464
12
2.4
13
88
11
53
13
6
13
66
1.43

Tables:   1

The End!