Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021938.1 Corchorus olitorius cultivar O-4 contig21971, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47176

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4373--4686
167
1.9
167
97
0
601
36
13
14
36
1.85
5272--5310
20
1.9
21
84
5
53
46
2
0
51
1.14
14266--14295
15
2.0
15
100
0
60
13
0
6
80
0.91
14268--14304
15
2.5
15
90
0
56
16
0
8
75
1.02
18081--18121
21
1.9
22
85
14
59
43
0
2
53
1.13
21819--21848
12
2.5
12
94
0
51
36
0
40
23
1.55
25049--25097
21
2.4
21
77
16
57
67
6
8
18
1.37
25526--25564
7
5.4
7
81
6
51
64
10
2
23
1.37
26951--27300
124
2.8
123
86
3
497
25
26
24
24
2.00
28999--29052
25
2.2
25
96
0
99
18
14
29
37
1.91
29051--29151
53
1.9
53
97
0
193
22
27
23
25
2.00
32863--32895
3
11.0
3
93
0
57
63
0
3
33
1.10
33246--35142
650
2.9
655
91
4
2941
41
22
11
24
1.87
37331--37382
22
2.4
22
93
6
88
80
3
7
7
1.00
39657--39766
37
3.0
37
87
2
159
32
16
15
35
1.90
46465--46495
6
5.0
6
92
7
53
83
0
0
16
0.64
46465--46492
13
2.2
13
100
0
56
85
0
0
14
0.59

Tables:   1

The End!