Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002194.1 Corchorus olitorius cultivar O-4 contig02194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1448
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36


Found at i:63 original size:18 final size:19

Alignment explanation


    Indices: 28--66  Score: 53
    Period size: 18  Copynumber: 2.1  Consensus size: 19

         18 ATTTTAATAG

                      *  *     
         28 AATTTAAATAGAATTTAAA
          1 AATTTAAATAAAAATTAAA

                               
         47 AATTT-AATAAAAATTAAA
          1 AATTTAAATAAAAATTAAA

              
         65 AA
          1 AA

         67 AATAAGAATT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  18   13  0.72
  19    5  0.28

ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33


Consensus pattern (19 bp):   
AATTTAAATAAAAATTAAA

Found at i:1031 original size:16 final size:16

Alignment explanation


    Indices: 1010--1044  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1000 TATCGGGTAT

                   *        
       1010 TTTATTTCCTAGCGTA
          1 TTTATTTACTAGCGTA

                    *       
       1026 TTTATTTATTAGCGTA
          1 TTTATTTACTAGCGTA

               
       1042 TTT
          1 TTT

       1045 GCTCTTTCTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57


Consensus pattern (16 bp):   
TTTATTTACTAGCGTA
Done.