genome.fa.s21940.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021940.1 Corchorus olitorius cultivar O-4 contig21973, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122469

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675--730	12	4.8	12	81	14	57	35	5	8	50	1.57
675--726	24	2.2	23	86	3	68	38	5	9	46	1.61
5022--5046	11	2.3	11	100	0	50	8	16	8	68	1.38
5807--5848	15	2.7	15	92	3	66	11	9	14	64	1.50
6192--6232	21	2.0	20	86	13	57	4	7	14	73	1.22
6254--6297	23	1.9	23	90	9	72	45	11	18	25	1.82
6389--6423	17	2.1	16	89	5	52	8	2	11	77	1.10
9389--9443	21	2.6	21	94	0	92	14	47	21	16	1.82
13364--13705	171	2.0	171	98	0	666	35	15	20	27	1.93
15329--16431	61	17.8	61	78	9	731	26	24	14	34	1.94
15465--15567	50	2.1	50	87	3	145	30	24	16	29	1.96
15739--15823	28	2.8	29	71	15	75	29	29	14	27	1.95
15739--15842	33	3.3	33	67	17	94	30	27	14	26	1.95
15516--16428	65	14.5	63	77	10	689	26	25	14	34	1.94
15518--16428	132	7.2	129	80	7	711	26	25	14	34	1.93
15515--16371	197	4.5	190	77	10	667	26	24	13	34	1.93
16123--16306	34	5.5	34	64	16	89	23	23	15	38	1.92
20755--20788	17	2.0	17	88	0	50	70	14	0	14	1.17
20801--20907	38	2.9	37	84	8	121	26	16	17	39	1.91
20810--20944	34	3.9	34	83	7	155	28	16	18	37	1.92
23044--23487	218	2.0	217	93	0	762	36	19	7	36	1.81
24131--24178	21	2.3	21	92	0	78	8	27	45	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24250--24304	16	3.4	16	78	9	58	70	3	9	16	1.27
24572--24622	17	3.1	16	86	8	66	35	21	21	21	1.96
25139--25280	49	3.0	47	81	9	160	50	5	15	28	1.66
27900--27973	15	4.9	15	77	12	80	12	27	24	36	1.91
27900--27973	30	2.5	30	86	4	105	12	27	24	36	1.91
29186--29273	18	4.9	18	85	0	122	13	20	40	25	1.89
29806--29948	49	3.0	47	79	9	146	51	4	16	27	1.62
51045--51070	4	6.5	4	100	0	52	76	0	0	23	0.78
53026--53268	122	2.0	122	97	0	459	32	20	15	31	1.94
55958--56024	30	2.2	30	83	0	80	29	16	26	26	1.97
56184--56220	18	2.1	18	89	0	56	51	16	13	18	1.76
61803--61874	27	2.7	27	82	0	81	27	18	31	22	1.97
69270--69369	45	2.2	45	87	3	139	36	17	16	31	1.91
73094--73225	64	2.1	63	90	2	203	26	9	25	39	1.85
77582--77653	29	2.5	29	86	8	78	18	11	19	51	1.75
77590--77653	29	2.3	28	91	5	103	17	10	21	50	1.77
91523--91565	12	3.6	12	77	0	50	9	2	60	27	1.40
91527--91582	18	3.3	18	75	9	64	12	3	60	23	1.47
91775--91825	12	4.5	12	78	14	63	9	3	64	21	1.40
91776--91833	21	2.8	21	84	5	73	10	3	63	22	1.40
91846--91899	12	4.5	12	76	0	63	9	7	48	35	1.63
91872--91929	15	3.7	15	76	13	53	3	12	53	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91845--91903	24	2.5	24	82	0	73	8	10	47	33	1.68
91775--91959	12	15.2	12	69	3	55	9	7	57	25	1.56
91974--92028	24	2.3	24	80	0	65	18	3	58	20	1.54
93805--93870	34	2.0	32	85	5	87	28	27	19	24	1.99
98632--98662	16	1.9	16	100	0	62	25	25	19	29	1.99
99718--99775	19	2.9	19	87	5	80	29	22	12	36	1.90
104311--104353	15	2.8	15	92	3	68	11	9	13	65	1.48
104525--104596	29	2.4	29	88	4	99	19	13	33	33	1.91
104525--104597	30	2.4	29	88	4	101	19	13	34	32	1.91
104744--104801	24	2.7	21	75	17	64	50	10	8	31	1.67
106353--106410	28	2.0	29	90	3	91	39	6	10	43	1.66
109561--109612	22	2.4	21	83	3	68	17	46	21	15	1.84
109567--109612	21	2.1	22	88	4	67	17	47	21	13	1.81
109964--109993	15	2.1	14	93	6	51	13	16	6	63	1.50
110295--110343	24	2.0	24	96	0	89	30	4	18	46	1.67
112888--112929	15	2.7	15	88	3	57	11	9	16	61	1.55
114181--114222	18	2.3	19	79	4	50	16	21	2	59	1.48
115376--115543	84	2.0	84	100	0	336	23	26	11	38	1.90
118027--118084	27	2.1	27	83	6	71	43	6	18	31	1.77
121106--121238	55	2.4	56	91	6	209	42	9	9	39	1.70
122045--122121	39	2.0	40	94	2	138	51	9	2	36	1.47
122112--122157	24	2.0	23	91	4	74	30	4	8	56	1.49

Tables:   1

The End!