Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021944.1 Corchorus olitorius cultivar O-4 contig21977, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62101

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9266--9411
74
2.0
72
94
2
256
15
26
16
41
1.88
11892--11976
29
2.8
31
87
3
120
24
23
16
35
1.95
11893--11992
31
3.3
30
81
5
112
26
24
15
35
1.94
11935--12000
31
2.2
29
81
10
71
28
28
10
31
1.90
12679--12725
22
2.2
22
88
3
69
29
10
14
44
1.79
20257--20300
3
14.3
3
90
9
63
36
0
0
63
0.95
21613--21643
12
2.6
12
89
0
53
25
22
6
45
1.76
27674--27709
12
3.1
12
88
4
56
69
5
5
19
1.29
28007--28140
68
2.0
69
88
7
202
23
14
14
47
1.81
30011--30045
2
18.0
2
94
5
63
48
0
0
51
1.00
31112--31336
112
2.0
111
96
0
414
44
4
10
41
1.58
31777--31865
31
2.9
31
84
3
99
38
25
16
19
1.92
33224--33430
84
2.4
84
86
4
283
23
12
23
41
1.88
33227--33384
41
3.8
41
72
8
122
22
13
23
41
1.89
35836--35860
11
2.3
11
100
0
50
84
8
8
0
0.79
38595--38743
52
2.9
51
93
6
246
31
14
14
38
1.87
38646--38733
25
3.4
25
66
6
77
32
14
12
39
1.84
41212--41417
72
2.9
72
92
1
315
33
17
28
20
1.95
47847--47991
35
4.1
35
86
0
182
27
19
31
22
1.98
53679--53826
41
3.5
41
77
8
156
22
10
25
41
1.85
53710--53853
41
3.4
42
79
13
168
23
11
25
39
1.88
53679--53872
84
2.3
86
85
7
263
22
9
25
41
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56239--56282
23
1.9
23
95
0
79
29
6
22
40
1.80
56359--56411
24
2.3
23
87
9
72
30
3
1
64
1.22
61444--61478
17
2.1
17
100
0
70
37
17
5
40
1.73
61638--61675
18
2.2
17
95
4
67
44
0
23
31
1.54
61642--61675
9
3.9
9
92
3
52
47
0
26
26
1.53

Tables:   1

The End!