Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021945.1 Corchorus olitorius cultivar O-4 contig21978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6114
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Found at i:445 original size:49 final size:49

Alignment explanation


    Indices: 356--497  Score: 173
    Period size: 49  Copynumber: 2.9  Consensus size: 49

        346 AAGCAATTCC

                *      *                      **             
        356 TTTACTTTTCACTGCATCTTTTTCTCAATTTTTACTACAAAATTGAACT
          1 TTTAATTTTCATTGCATCTTTTTCTCAATTTTTAAGACAAAATTGAACT

                     *                                     *  
        405 TTT-ATTTTTACTTGCATCTTTTTCTCAATTTTTAAGACAAAATTGATCT
          1 TTTAATTTTCA-TTGCATCTTTTTCTCAATTTTTAAGACAAAATTGAACT

                        *          *          *           
        454 TTTAATTTTCATCGCA-CTTTTTATCAATTTTT-TGACAAAATTGA
          1 TTTAATTTTCATTGCATCTTTTTCTCAATTTTTAAGACAAAATTGA

        498 TTGGCACGCT


Statistics
Matches: 81,  Mismatches: 10, Indels: 6
        0.84            0.10        0.06

Matches are distributed among these distances:
  47   11  0.14
  48   20  0.25
  49   44  0.54
  50    6  0.07

ACGTcount: A:0.27, C:0.16, G:0.06, T:0.51


Consensus pattern (49 bp):   
TTTAATTTTCATTGCATCTTTTTCTCAATTTTTAAGACAAAATTGAACT
Done.