Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021947.1 Corchorus olitorius cultivar O-4 contig21980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19150

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
188--232
20
2.4
19
81
7
56
24
8
20
46
1.78
10105--10143
2
19.5
2
100
0
78
51
0
0
48
1.00
11043--11084
21
1.9
23
85
9
61
61
0
7
30
1.22
11313--11415
33
3.2
32
82
14
142
58
3
2
34
1.31
11316--11415
28
3.2
32
82
14
120
58
4
3
35
1.32
11411--11448
18
2.0
20
90
10
62
52
7
13
26
1.67
12253--12282
2
15.0
2
100
0
60
50
0
0
50
1.00
12361--12397
2
18.5
2
89
10
58
48
2
0
48
1.15
12177--12390
109
2.0
109
96
1
394
36
10
17
35
1.84
12361--12397
17
2.2
17
95
0
65
48
2
0
48
1.15
12361--12389
15
1.9
15
100
0
58
48
0
0
51
1.00
12624--12688
18
3.4
18
66
25
53
50
10
3
35
1.53
12624--12694
17
3.8
17
69
18
52
47
11
2
38
1.54
14034--14061
2
14.0
2
100
0
56
50
0
0
50
1.00
15178--15206
7
4.1
7
100
0
58
86
13
0
0
0.58
15342--15379
2
20.5
2
84
15
55
47
0
0
52
1.00
15826--15887
32
1.9
32
87
6
90
38
11
9
40
1.74
16137--16169
2
17.0
2
93
6
59
51
0
0
48
1.00

Tables:   1

The End!