Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021950.1 Corchorus olitorius cultivar O-4 contig21983, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11674
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:771 original size:24 final size:25

Alignment explanation


    Indices: 733--783  Score: 77
    Period size: 24  Copynumber: 2.1  Consensus size: 25

        723 ATTGGAGTAT

                           *         
        733 TTATTTATCTTGTTTCTTAATTTTA
          1 TTATTTATCTTGTTTATTAATTTTA

                              *      
        758 TTATTT-TCTTGTTTATTTATTTTA
          1 TTATTTATCTTGTTTATTAATTTTA

              
        782 TT
          1 TT

        784 GTTACTCTAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  24   18  0.75
  25    6  0.25

ACGTcount: A:0.18, C:0.06, G:0.04, T:0.73


Consensus pattern (25 bp):   
TTATTTATCTTGTTTATTAATTTTA

Found at i:8702 original size:15 final size:16

Alignment explanation


    Indices: 8672--8711  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       8662 TTACTCTGCT

                            
       8672 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                     *      
       8688 TTGTTTT-TTGTTTAA
          1 TTGTTTTCTAGTTTAA

               *     
       8703 TTGCTTTCT
          1 TTGTTTTCT

       8712 GTCAATCTCT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  15   13  0.62
  16    8  0.38

ACGTcount: A:0.12, C:0.07, G:0.12, T:0.68


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.