Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021951.1 Corchorus olitorius cultivar O-4 contig21984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58551

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2597--2642
24
2.0
23
82
4
56
26
15
10
47
1.78
9332--9477
49
3.0
48
83
7
181
47
6
17
28
1.72
17689--17730
2
21.0
2
95
0
75
47
0
0
52
1.00
17858--17883
12
2.2
12
100
0
52
23
42
0
34
1.54
22900--22958
29
2.0
30
86
3
84
50
3
3
42
1.35
23062--23111
25
2.0
25
85
11
68
42
0
2
56
1.11
24304--24339
14
2.6
14
100
0
72
44
11
0
44
1.39
25118--25190
29
2.4
29
84
4
74
31
17
10
39
1.85
25141--25197
29
2.0
28
86
3
78
26
19
14
40
1.89
25345--25404
31
1.9
31
100
0
120
45
13
13
28
1.81
25881--25918
20
1.9
20
88
0
58
42
5
0
52
1.24
26087--26373
151
1.9
149
85
8
395
37
8
3
50
1.51
26733--26839
48
2.2
48
100
0
214
10
14
29
44
1.79
26735--26805
16
4.5
15
72
6
52
11
15
29
43
1.81
30245--30312
33
2.1
33
97
0
127
32
17
5
44
1.73
30963--31177
109
2.0
107
93
4
371
30
10
14
44
1.80
31889--31923
12
2.9
12
86
0
52
8
34
2
54
1.46
35934--36010
37
2.1
37
97
0
145
25
25
22
25
2.00
43634--43673
15
2.6
16
88
4
55
15
10
12
62
1.54
50308--50343
17
2.1
17
89
0
54
30
11
19
38
1.86
50551--50584
17
2.0
17
88
0
50
41
17
11
29
1.85
52636--52689
28
2.0
27
88
3
81
42
0
3
53
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55048--55178
52
2.5
52
90
2
174
57
4
5
32
1.42
55074--55170
26
3.7
27
73
19
98
54
5
6
34
1.47
55067--55144
15
4.5
18
65
24
51
56
5
5
33
1.43
55098--55182
26
3.2
27
71
18
88
57
3
4
34
1.37

Tables:   1

The End!