Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021954.1 Corchorus olitorius cultivar O-4 contig21987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38692

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76--314
126
1.9
123
86
7
338
53
1
10
34
1.42
863--890
7
4.0
7
100
0
56
85
0
14
0
0.59
933--1027
31
3.1
31
87
6
140
32
14
11
41
1.82
2618--2662
23
2.0
23
95
0
81
40
13
11
35
1.80
4561--4858
22
13.5
22
72
10
173
38
8
14
38
1.76
4561--4667
45
2.4
45
83
7
121
41
7
14
36
1.75
4700--4739
21
1.9
21
89
0
62
42
7
15
35
1.75
4646--4870
87
2.6
88
83
6
271
36
8
15
40
1.76
4561--4867
44
7.0
43
73
12
223
38
8
14
38
1.76
5703--5757
17
2.9
19
72
22
62
45
5
27
21
1.74
15774--15803
14
2.1
14
100
0
60
43
0
6
50
1.28
16607--16668
27
2.2
28
83
8
74
37
9
20
32
1.86
25203--25250
18
2.8
17
84
6
69
64
0
12
22
1.27
26152--26184
12
2.8
12
90
0
57
45
36
9
9
1.68
27937--28013
40
1.9
40
91
0
127
35
20
2
41
1.66
28761--28807
16
2.9
16
75
15
51
21
19
0
59
1.38
30808--30841
3
11.3
3
93
0
59
32
64
0
2
1.08
31746--31776
16
1.9
16
93
0
53
0
16
0
83
0.64
37163--37199
17
2.2
17
90
0
56
56
21
5
16
1.59
37913--37938
2
13.0
2
100
0
52
50
0
0
50
1.00
38222--38282
34
1.9
32
87
12
90
55
14
8
21
1.65

Tables:   1

The End!