Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021961.1 Corchorus olitorius cultivar O-4 contig21994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23845
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30


Found at i:11756 original size:22 final size:22

Alignment explanation


    Indices: 11711--11756  Score: 65
    Period size: 22  Copynumber: 2.1  Consensus size: 22

      11701 TTTGGCCGGC

                               *  
      11711 AACTGAGTTTTGGTGTGATGTT
          1 AACTGAGTTTTGGTGTGATCTT

                 *           *    
      11733 AACTGGGTTTTGGTGTGTTCTT
          1 AACTGAGTTTTGGTGTGATCTT

              
      11755 AA
          1 AA

      11757 TTGGATGTAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.17, C:0.07, G:0.30, T:0.46


Consensus pattern (22 bp):   
AACTGAGTTTTGGTGTGATCTT
Done.