Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021967.1 Corchorus olitorius cultivar O-4 contig22000, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6282
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34


Found at i:5990 original size:103 final size:103

Alignment explanation


    Indices: 5883--6189  Score: 334
    Period size: 103  Copynumber: 3.0  Consensus size: 103

       5873 TTTGCTACAG

                   *             *    *                    *     *           
       5883 ATTTTGCCACGAAATTAATTTCCGTGGAAAATTAAAATTTGAATTCCTGCTCCCTCAAAAATTTT
          1 ATTTTGCAACGAAATTAATTTTCGTGAAAAATTAAAATTTGAATTCCCGCTCCATCAAAAATTTT

                              *            *      
       5948 GCGCCAAAATAAATTTTTGCAACGGAAATTATTACAAA
         66 GCGCCAAAATAAATTTTTACAACGGAAATTACTACAAA

                              *               *         *         *  *   *   
       5986 ATTTTGCAACG-AATTCAGTTTTCGT-AACAAATCAAAATTTGAGTTCCCGCTCGATTAAATATT
          1 ATTTTGCAACGAAATT-AATTTTCGTGAA-AAATTAAAATTTGAATTCCCGCTCCATCAAAAATT

                                                    
       6049 TTGCGCCAAAATAAATTTTTACAACGGAAATTACTACAAA
         64 TTGCGCCAAAATAAATTTTTACAACGGAAATTACTACAAA

            *            *            **                 *            *  *   
       6089 TTTTTGCAACGAATTTAATTTTCGTGTCAAATTAAAATTTGAATTTCCG--CCAGTTCCAATATT
          1 ATTTTGCAACGAAATTAATTTTCGTGAAAAATTAAAATTTGAATTCCCGCTCCA--TCAAAAATT

                   *         *  *   *             
       6152 TTGCGCCCAAATAAATTGTTCCAATGGAAATTACTACA
         64 TTGCGCCAAAATAAATTTTTACAACGGAAATTACTACA

       6190 GAAAAATCCA


Statistics
Matches: 170,  Mismatches: 28, Indels: 12
        0.81            0.13        0.06

Matches are distributed among these distances:
 101    2  0.01
 102    5  0.03
 103  160  0.94
 104    3  0.02

ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35


Consensus pattern (103 bp):   
ATTTTGCAACGAAATTAATTTTCGTGAAAAATTAAAATTTGAATTCCCGCTCCATCAAAAATTTT
GCGCCAAAATAAATTTTTACAACGGAAATTACTACAAA
Done.