Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021969.1 Corchorus olitorius cultivar O-4 contig22002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32400

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2467--2548
43
1.9
43
90
7
132
48
4
1
45
1.31
3342--3572
22
10.4
22
65
19
70
41
9
12
36
1.75
8865--8913
16
3.1
15
77
8
53
12
18
34
34
1.88
9115--9154
17
2.4
17
86
0
53
37
17
20
25
1.94
9660--9689
15
1.9
16
93
6
53
83
0
16
0
0.65
18334--18379
20
2.3
20
100
0
92
15
19
23
41
1.89
20482--20526
18
2.5
18
96
0
81
22
26
22
28
1.99
21728--21752
11
2.3
11
100
0
50
92
0
8
0
0.40
26078--26102
2
12.5
2
100
0
50
52
0
0
48
1.00
26251--26306
29
1.9
29
96
0
103
21
3
30
44
1.69
26769--26793
7
3.6
7
100
0
50
60
16
24
0
1.36
27411--27465
19
2.7
21
88
8
87
18
10
10
60
1.59
30410--30503
45
2.2
42
84
7
127
36
6
20
37
1.78
31585--31714
49
2.7
47
85
10
165
50
6
15
28
1.68

Tables:   1

The End!