Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021970.1 Corchorus olitorius cultivar O-4 contig22003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80096

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1577--1635
15
3.9
15
82
6
66
10
23
25
40
1.86
2867--2954
18
4.9
18
80
0
95
14
19
38
27
1.91
3488--3630
49
3.0
48
83
8
166
53
5
13
27
1.62
8214--8294
39
2.0
40
92
2
137
50
8
3
37
1.51
9639--9708
36
1.9
36
91
0
113
60
8
10
21
1.55
25965--26008
19
2.3
19
84
0
61
40
0
47
11
1.39
25966--26007
17
2.3
18
84
8
50
38
0
50
11
1.40
35276--35330
28
2.0
28
81
0
65
40
21
5
32
1.76
36425--36506
40
2.0
40
100
0
164
35
7
21
35
1.82
37088--37145
21
2.7
21
81
2
62
12
20
44
22
1.84
38630--38686
30
1.9
30
96
0
105
19
26
24
29
1.98
44121--44150
11
2.7
11
94
0
51
43
10
33
13
1.77
48472--49073
51
11.8
52
79
5
583
42
3
14
38
1.64
48419--49064
101
6.4
101
81
6
623
43
4
14
38
1.64
48581--48669
30
3.3
29
65
31
79
42
3
13
40
1.61
48469--49010
152
3.6
152
90
2
784
42
3
15
38
1.64
49630--50000
40
8.7
40
69
16
172
13
25
21
40
1.89
49662--49838
48
3.9
48
70
15
149
12
24
20
41
1.88
49630--50171
88
6.2
88
77
11
487
13
25
21
40
1.89
49880--50134
40
6.2
41
71
17
145
12
25
20
41
1.87
49798--50169
128
2.9
127
88
4
534
12
26
20
40
1.88
49645--50171
216
2.4
216
77
12
628
13
24
21
40
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50595--50916
178
1.8
177
86
3
468
35
13
17
33
1.89
53280--53391
38
2.9
38
97
0
206
17
14
8
58
1.61
53604--53632
2
14.5
2
100
0
58
51
0
0
48
1.00
57596--57631
10
3.7
10
96
3
65
11
0
47
41
1.39
59805--59861
21
2.6
22
83
2
71
12
19
45
22
1.83
59805--59855
11
4.8
10
81
11
57
11
19
47
21
1.81
64526--64559
17
2.0
17
88
0
50
44
2
2
50
1.32
65391--65445
25
2.3
24
81
6
67
36
12
3
47
1.59
73484--73517
16
2.1
16
100
0
68
26
32
11
29
1.92
75569--75612
11
4.0
11
85
8
54
54
2
0
43
1.12

Tables:   1

The End!