Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021976.1 Corchorus olitorius cultivar O-4 contig22009, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46317

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1919--2036
50
2.4
50
91
0
191
7
8
31
52
1.60
13363--13418
20
2.8
20
83
10
78
57
5
8
28
1.52
17811--18020
109
1.9
110
84
6
284
38
11
17
31
1.86
28955--28985
14
2.2
14
94
0
53
45
25
6
22
1.76
35502--35568
27
2.4
28
92
2
109
41
25
17
14
1.88
37164--37281
57
2.1
57
100
0
236
32
8
22
36
1.85
40492--40781
107
2.7
105
87
2
391
41
9
7
41
1.65
40507--40817
107
2.9
107
84
4
344
41
10
7
40
1.67
41498--41536
19
2.1
19
100
0
78
41
10
0
48
1.37
43768--43851
23
3.8
23
78
12
104
23
45
16
14
1.84
43770--43853
42
2.0
42
97
0
159
25
45
15
14
1.84
43775--43840
19
3.3
19
71
16
53
25
45
15
13
1.83
43954--44021
27
2.6
27
82
13
88
27
44
14
13
1.83

Tables:   1

The End!