Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021978.1 Corchorus olitorius cultivar O-4 contig22011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13466
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:1715 original size:19 final size:19

Alignment explanation


    Indices: 1691--1728  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1681 GAATAGAACC

                               
       1691 CGAATTCAGCAAGCAGAAT
          1 CGAATTCAGCAAGCAGAAT

                               
       1710 CGAATTCAGCAAGCAGAAT
          1 CGAATTCAGCAAGCAGAAT

       1729 AGAACTACTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16


Consensus pattern (19 bp):   
CGAATTCAGCAAGCAGAAT

Found at i:4862 original size:21 final size:21

Alignment explanation


    Indices: 4836--4880  Score: 90
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       4826 AGACAATTGA

                                 
       4836 TGGAACAAGTGAAGTGAGATT
          1 TGGAACAAGTGAAGTGAGATT

                                 
       4857 TGGAACAAGTGAAGTGAGATT
          1 TGGAACAAGTGAAGTGAGATT

               
       4878 TGG
          1 TGG

       4881 CACTGATTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.36, C:0.04, G:0.36, T:0.24


Consensus pattern (21 bp):   
TGGAACAAGTGAAGTGAGATT
Done.