Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021980.1 Corchorus olitorius cultivar O-4 contig22013, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31


Found at i:602 original size:33 final size:33

Alignment explanation


    Indices: 565--676  Score: 120
    Period size: 33  Copynumber: 3.4  Consensus size: 33

        555 ATTAGCATCC

                           * *                
        565 AAAACAGAATTT-GTTTGATCACAAACAACACCT
          1 AAAACAG-ATTTAGTGTCATCACAAACAACACCT

                                             
        598 AAAACAGATTTAGTGTCATCACAAACAACA-CT
          1 AAAACAGATTTAGTGTCATCACAAACAACACCT

                **  *      *     *         *  
        630 CAAATTAGGTTTAGTATCATCGCAAACAACATCT
          1 -AAAACAGATTTAGTGTCATCACAAACAACACCT

                         
        664 AAAACAGATTTAG
          1 AAAACAGATTTAG

        677 AATTACTCTT


Statistics
Matches: 66,  Mismatches: 10, Indels: 6
        0.80            0.12        0.07

Matches are distributed among these distances:
  32    6  0.09
  33   58  0.88
  34    2  0.03

ACGTcount: A:0.45, C:0.20, G:0.11, T:0.25


Consensus pattern (33 bp):   
AAAACAGATTTAGTGTCATCACAAACAACACCT
Done.