Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021989.1 Corchorus olitorius cultivar O-4 contig22022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15673
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--35  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

                                                                
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         36 TTCCATTTTC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:2813 original size:18 final size:18

Alignment explanation


    Indices: 2790--2825  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       2780 TTAAATTTAA

                      *       
       2790 ATTTTTGTAATAAAAATG
          1 ATTTTTGTAAAAAAAATG

                  *           
       2808 ATTTTTTTAAAAAAAATG
          1 ATTTTTGTAAAAAAAATG

       2826 GAATTGTTTG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.47, C:0.00, G:0.08, T:0.44


Consensus pattern (18 bp):   
ATTTTTGTAAAAAAAATG
Done.