Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002199.1 Corchorus olitorius cultivar O-4 contig02199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1426
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28


Found at i:566 original size:27 final size:27

Alignment explanation


    Indices: 525--610  Score: 109
    Period size: 27  Copynumber: 3.2  Consensus size: 27

        515 AAAGTGCTTA

                    * *      *     *   
        525 AAATGACCGAGATGCCCTTGAACGTGC
          1 AAATGACCAAAATGCCCCTGAACATGC

                                *      
        552 AAATGACCAAAATGCCCCTGGACATGC
          1 AAATGACCAAAATGCCCCTGAACATGC

               *   *                   
        579 AAAAGACTAAAATGCCCCTGAACATGC
          1 AAATGACCAAAATGCCCCTGAACATGC

                 
        606 AAATG
          1 AAATG

        611 GCCCCAAAAT


Statistics
Matches: 50,  Mismatches: 9, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   50  1.00

ACGTcount: A:0.38, C:0.26, G:0.20, T:0.16


Consensus pattern (27 bp):   
AAATGACCAAAATGCCCCTGAACATGC
Done.