Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021991.1 Corchorus olitorius cultivar O-4 contig22024, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4371

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1318--1463
76
1.9
75
83
4
186
36
10
20
32
1.86
2262--2292
15
2.1
15
100
0
62
80
0
6
12
0.89
2284--2328
23
2.0
22
91
4
72
75
11
0
13
1.05
2272--2328
22
2.5
22
82
5
69
77
8
1
12
1.07
2286--2329
9
5.4
9
79
20
53
77
11
0
11
1.00
2290--2319
14
2.2
14
94
5
53
73
13
0
13
1.10
2287--2335
23
2.2
21
89
10
71
75
12
0
12
1.05
2286--2335
22
2.2
22
92
7
82
76
12
0
12
1.04
2951--3099
49
3.0
50
92
2
246
32
16
13
37
1.87
3515--3716
91
2.3
88
88
4
289
31
19
13
35
1.91
3796--4143
50
6.9
50
93
1
570
30
28
13
27
1.94

Tables:   1

The End!