Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022001.1 Corchorus olitorius cultivar O-4 contig22034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2526
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35


Found at i:190 original size:19 final size:20

Alignment explanation


    Indices: 154--197  Score: 56
    Period size: 19  Copynumber: 2.2  Consensus size: 20

        144 TTATTAGAGC

                                
        154 TATTTATCTATTACTTAAT-
          1 TATTTATCTATTACTTAATA

                          *      
        173 TATTTAT-TATTATTTTAATA
          1 TATTTATCTATTA-CTTAATA

                 
        193 TATTT
          1 TATTT

        198 TTTTATTAAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  18    5  0.23
  19   12  0.55
  20    5  0.23

ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64


Consensus pattern (20 bp):   
TATTTATCTATTACTTAATA
Done.