Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022005.1 Corchorus olitorius cultivar O-4 contig22038, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54597

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2006--2108
37
2.7
38
90
3
172
32
20
18
29
1.96
3880--3919
15
2.6
16
88
4
64
67
12
5
15
1.38
8179--9263
47
22.8
47
84
9
1296
45
5
19
28
1.72
9027--9192
83
2.0
83
82
8
201
43
6
19
30
1.77
9168--9336
54
3.1
54
84
6
218
46
6
18
28
1.73
9311--9385
36
2.1
36
92
0
123
50
5
22
21
1.68
13682--13884
14
14.3
13
67
20
79
49
0
8
41
1.34
13680--13838
44
3.6
44
81
6
173
50
0
9
40
1.35
13801--13910
55
2.0
55
89
3
168
50
0
8
41
1.32
13907--13983
32
2.4
32
78
4
84
24
15
20
38
1.92
13927--14068
32
4.4
32
82
3
108
19
23
20
36
1.95
14075--14124
21
2.3
20
83
10
55
34
14
10
42
1.78
35742--35804
29
2.2
29
82
0
72
15
7
30
46
1.75
38153--38183
2
15.0
2
93
6
53
48
3
0
48
1.17
42267--42319
28
2.0
26
88
7
79
11
15
3
69
1.31
44206--44259
21
2.6
21
80
16
60
48
7
12
31
1.69
44326--44370
21
2.1
21
84
8
56
51
15
8
24
1.72
44829--44854
9
2.9
9
100
0
52
23
0
19
57
1.40
45188--45432
84
2.9
84
83
6
286
37
26
11
24
1.90
45188--45471
45
6.7
43
75
10
219
35
27
11
25
1.90
52552--52609
3
19.0
3
80
7
55
36
3
1
58
1.25
53960--53993
2
17.0
2
93
0
59
52
0
0
47
1.00

Tables:   1

The End!