Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022010.1 Corchorus olitorius cultivar O-4 contig22043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21653

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
209--281
18
3.9
18
74
10
58
24
6
1
67
1.23
251--311
30
2.0
30
93
0
104
24
13
0
62
1.31
274--328
19
2.9
19
74
15
53
23
12
0
63
1.29
311--399
4
24.0
4
69
17
50
25
4
1
68
1.15
270--402
44
3.0
43
83
9
153
25
7
0
66
1.23
4209--4529
35
9.0
35
83
7
380
26
13
19
40
1.89
4232--4529
104
2.8
107
86
8
392
25
13
19
40
1.88
6065--6128
30
2.2
30
88
2
94
25
10
1
62
1.37
6072--6132
30
2.0
30
93
0
104
24
13
0
62
1.31
6095--6149
19
2.9
19
74
15
53
23
12
0
63
1.29
6132--6223
4
24.0
4
68
16
52
26
4
1
68
1.15
6097--6226
44
2.8
45
85
6
156
25
7
0
66
1.24
12536--12569
18
2.0
17
88
11
52
14
11
14
58
1.63
21350--21402
17
3.1
17
83
5
63
32
16
18
32
1.94

Tables:   1

The End!