Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022013.1 Corchorus olitorius cultivar O-4 contig22046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35976

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65--108
7
6.1
7
81
5
52
2
11
2
84
0.81
68--102
16
2.2
16
95
5
63
0
11
2
85
0.69
325--355
15
2.1
15
93
0
53
12
6
0
80
0.89
4695--4733
16
2.4
16
87
8
53
43
0
15
41
1.46
5151--5178
12
2.3
12
100
0
56
0
7
0
92
0.37
10424--10471
24
2.0
24
100
0
96
54
4
0
41
1.20
13295--13381
34
2.6
34
98
0
165
28
11
33
26
1.91
26879--26928
3
17.7
3
76
19
54
34
2
2
62
1.18
26879--26928
17
2.9
17
85
8
66
34
2
2
62
1.18
26879--26916
8
4.6
8
87
6
58
36
2
0
60
1.11
28332--28376
23
1.9
24
86
4
65
6
11
11
71
1.31
28724--28826
52
2.0
52
96
0
188
35
9
12
41
1.76
31126--31167
22
1.9
22
95
0
75
52
16
11
19
1.74
31574--31605
16
2.0
16
100
0
64
31
12
12
43
1.80
33402--33789
194
2.0
193
93
1
670
35
9
21
33
1.85
34010--34174
22
7.6
22
73
12
119
39
14
7
38
1.75
34010--34173
43
3.8
43
78
10
160
39
14
7
38
1.75

Tables:   1

The End!