Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022017.1 Corchorus olitorius cultivar O-4 contig22050, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5492
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:3542 original size:30 final size:29

Alignment explanation


    Indices: 3498--3563  Score: 96
    Period size: 30  Copynumber: 2.2  Consensus size: 29

       3488 TTGAGATAAT

                     *            *      
       3498 TCTTCAATAGTCTTCAAATCTTGAAATTA
          1 TCTTCAATAATCTTCAAATCTTCAAATTA

                                          
       3527 TCTTCAATAAATCTTCAAATCTTCAAATTA
          1 TCTTCAAT-AATCTTCAAATCTTCAAATTA

             *     
       3557 TTTTCAA
          1 TCTTCAA

       3564 ACACGAACTT


Statistics
Matches: 33,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  29    8  0.24
  30   25  0.76

ACGTcount: A:0.36, C:0.18, G:0.03, T:0.42


Consensus pattern (29 bp):   
TCTTCAATAATCTTCAAATCTTCAAATTA
Done.