Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022018.1 Corchorus olitorius cultivar O-4 contig22051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2807
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35


Found at i:195 original size:30 final size:30

Alignment explanation


    Indices: 159--236  Score: 90
    Period size: 29  Copynumber: 2.6  Consensus size: 30

        149 CATCAAAAAA

                                           
        159 GGGCTTATTTGGCCTTTTTAA-AGAGTTCAG
          1 GGGCTTATTTGGCC-TTTTAATAGAGTTCAG

                            **             
        189 GGGCTTATTTGG-C-TGCAATTAGAGTTCAG
          1 GGGCTTATTTGGCCTTTTAA-TAGAGTTCAG

                               
        218 GGGCTTATTTGGCCGTTTT
          1 GGGCTTATTTGGCC-TTTT

        237 GTGTAAGTTG


Statistics
Matches: 39,  Mismatches: 4, Indels: 8
        0.76            0.08        0.16

Matches are distributed among these distances:
  27    3  0.08
  29   22  0.56
  30   13  0.33
  32    1  0.03

ACGTcount: A:0.17, C:0.14, G:0.29, T:0.40


Consensus pattern (30 bp):   
GGGCTTATTTGGCCTTTTAATAGAGTTCAG
Done.