Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022022.1 Corchorus olitorius cultivar O-4 contig22055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18359

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--305
36
8.4
35
78
8
277
43
19
18
18
1.88
4--313
108
2.9
106
91
2
487
43
18
19
18
1.88
1838--1868
14
2.3
14
94
5
55
35
12
6
45
1.68
7366--7419
24
2.2
24
96
0
99
25
3
40
29
1.73
7368--7412
13
3.6
13
76
11
58
24
4
40
31
1.75
9386--9416
13
2.4
13
94
0
53
19
9
0
70
1.14
15147--15371
42
5.4
40
81
7
252
36
20
12
30
1.90
15147--15379
21
11.1
21
80
0
216
36
21
12
29
1.90
15812--15942
45
2.9
45
90
0
208
37
19
6
35
1.79
17120--17201
41
2.0
41
100
0
164
43
12
9
34
1.75

Tables:   1

The End!