Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022024.1 Corchorus olitorius cultivar O-4 contig22057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30175

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
125--201
39
2.0
39
84
5
102
27
27
7
37
1.84
162--194
16
2.1
16
94
0
57
21
27
12
39
1.88
181--277
47
2.1
47
92
0
158
32
31
9
25
1.88
324--420
47
2.1
47
100
0
194
48
16
5
29
1.68
2652--3035
36
10.8
37
74
13
247
26
40
11
20
1.88
2652--2953
69
4.2
69
75
15
210
27
39
12
20
1.89
2727--2923
30
5.9
30
72
19
124
26
41
10
21
1.85
2616--2998
105
3.6
105
85
5
432
26
40
11
20
1.86
2781--3073
36
8.1
36
67
12
154
26
43
10
20
1.84
2635--2923
141
2.1
135
82
6
339
26
41
11
20
1.87
2883--3064
72
2.5
72
87
4
258
24
42
10
21
1.85
8420--8512
20
4.6
20
65
19
57
53
8
0
37
1.32
8420--8543
62
2.0
62
100
0
248
53
9
0
37
1.34
8694--8726
2
16.5
2
100
0
66
51
0
0
48
1.00
9784--9845
31
2.0
31
90
0
97
37
17
4
40
1.71
27583--27644
31
2.0
31
93
0
106
33
17
6
41
1.75

Tables:   1

The End!