Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022026.1 Corchorus olitorius cultivar O-4 contig22059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6473
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32


Found at i:6099 original size:54 final size:54

Alignment explanation


    Indices: 6015--6122  Score: 182
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       6005 GATTATTGAA

                                     *                             
       6015 TTGAACAGGGAACCATAAATGATACGTGGGAAGATTAGAGGTGGAA-AAGATCAG
          1 TTGAACAGGGAACCATAAATGATACATGGGAAGATTAGAGGTGGAAGAA-ATCAG

                   *                                              
       6069 TTGAACATGGAACCATAAATGATACATGGGAAGATTAGAGGTGGAAGAAATCAG
          1 TTGAACAGGGAACCATAAATGATACATGGGAAGATTAGAGGTGGAAGAAATCAG

       6123 GTTCAATGAT


Statistics
Matches: 51,  Mismatches: 2, Indels: 2
        0.93            0.04        0.04

Matches are distributed among these distances:
  54   49  0.96
  55    2  0.04

ACGTcount: A:0.42, C:0.09, G:0.30, T:0.19


Consensus pattern (54 bp):   
TTGAACAGGGAACCATAAATGATACATGGGAAGATTAGAGGTGGAAGAAATCAG
Done.