Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022027.1 Corchorus olitorius cultivar O-4 contig22060, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2429
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26


Found at i:985 original size:21 final size:21

Alignment explanation


    Indices: 961--1017  Score: 60
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        951 ATCCAACATC

                                 
        961 TGAGGCAGGCACAAGAAGAAA
          1 TGAGGCAGGCACAAGAAGAAA

                *  **       *  * 
        982 TGAGACATTCACAAGATGAGA
          1 TGAGGCAGGCACAAGAAGAAA

                     *     
       1003 TGAGGCAGGAACAAG
          1 TGAGGCAGGCACAAG

       1018 GTGTTATAAA


Statistics
Matches: 27,  Mismatches: 9, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.44, C:0.14, G:0.32, T:0.11


Consensus pattern (21 bp):   
TGAGGCAGGCACAAGAAGAAA

Found at i:1746 original size:10 final size:10

Alignment explanation


    Indices: 1731--1757  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

       1721 ACCAGATCAA

                      
       1731 GACATGGAAT
          1 GACATGGAAT

                      
       1741 GACATGGAAT
          1 GACATGGAAT

                   
       1751 GACATGG
          1 GACATGG

       1758 CTAATGCTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.37, C:0.11, G:0.33, T:0.19


Consensus pattern (10 bp):   
GACATGGAAT
Done.