Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022029.1 Corchorus olitorius cultivar O-4 contig22062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41749

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15--103
27
3.6
26
69
23
84
26
5
1
66
1.21
52--214
8
21.9
8
66
15
57
23
11
2
62
1.40
12--76
19
3.4
18
77
10
58
26
6
0
67
1.13
1--164
46
3.5
46
91
1
247
25
7
1
65
1.28
89--152
27
2.4
27
81
5
76
25
9
1
64
1.33
135--216
32
2.4
32
76
8
83
21
13
2
62
1.43
4194--4237
16
2.7
16
86
10
54
38
2
2
56
1.24
4197--4234
7
5.4
7
87
9
51
39
2
2
55
1.28
20664--20710
5
9.4
5
100
0
94
40
0
0
59
0.97
30252--30278
6
4.5
6
100
0
54
33
29
37
0
1.58
37823--37859
2
18.5
2
94
0
65
2
0
45
51
1.15
41495--41551
27
2.1
27
90
0
87
19
14
42
24
1.88

Tables:   1

The End!