Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022030.1 Corchorus olitorius cultivar O-4 contig22063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4890
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36


Found at i:4472 original size:105 final size:105

Alignment explanation


    Indices: 4291--4500  Score: 357
    Period size: 105  Copynumber: 2.0  Consensus size: 105

       4281 ATAATCTTAC

                                        *                           *   *    
       4291 TACTATATAAAATCACGAACTCAAAAATTTTAATTGGGAAATTTCTAAAATACCCTTAGTGTTAT
          1 TACTATATAAAATCACGAACTCAAAAATCTTAATTGGGAAATTTCTAAAATACCCTCAGTATTAT

                                                    
       4356 AGTATAATAATTTTTTAATTAATATTCTTATTAGTCATTA
         66 AGTATAATAATTTTTTAATTAATATTCTTATTAGTCATTA

                                                               ***           
       4396 TACTATATAAAATCACGAACTCAAAAATCTTAATTGGGAAATTTCTAAAATTTTCTCAGTATTAT
          1 TACTATATAAAATCACGAACTCAAAAATCTTAATTGGGAAATTTCTAAAATACCCTCAGTATTAT

                                         *          
       4461 AGTATAATAATTTTTTAATTAATATTCTTTTTAGTCATTA
         66 AGTATAATAATTTTTTAATTAATATTCTTATTAGTCATTA

       4501 AATTTTTTAT


Statistics
Matches: 98,  Mismatches: 7, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 105   98  1.00

ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43


Consensus pattern (105 bp):   
TACTATATAAAATCACGAACTCAAAAATCTTAATTGGGAAATTTCTAAAATACCCTCAGTATTAT
AGTATAATAATTTTTTAATTAATATTCTTATTAGTCATTA
Done.