genome.fa.s22031.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022031.1 Corchorus olitorius cultivar O-4 contig22064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75145

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470--515	22	2.1	22	91	0	74	50	26	0	23	1.50
476--512	18	2.1	18	89	0	56	51	27	0	21	1.48
914--1017	43	2.4	45	76	9	117	39	12	11	36	1.79
876--1055	65	2.8	65	77	6	177	38	10	14	36	1.81
831--1311	22	21.6	22	67	11	156	36	10	18	34	1.85
1292--1347	21	2.8	19	75	17	60	32	10	14	42	1.80
8552--8576	13	1.9	13	100	0	50	40	12	8	40	1.72
9292--9332	21	2.0	21	85	0	55	2	17	46	34	1.61
13244--13278	16	2.1	16	89	5	52	85	11	0	2	0.69
20360--20417	19	2.9	19	82	5	62	37	12	18	31	1.88
22731--22852	61	2.0	61	100	0	244	36	13	18	32	1.89
24826--24868	23	2.0	23	82	13	56	41	2	32	23	1.67
27156--27203	26	2.0	23	84	15	62	25	16	6	52	1.67
34057--34084	3	9.3	3	100	0	56	67	0	0	32	0.91
43818--43914	50	1.9	50	89	4	151	38	18	8	35	1.81
43906--43943	2	20.5	2	84	15	55	50	0	0	50	1.00
43906--43943	11	3.4	12	82	17	55	50	0	0	50	1.00
50127--50351	109	2.1	109	97	0	423	29	13	19	38	1.89
51731--51878	74	2.0	74	94	0	260	29	21	16	33	1.95
53895--53923	2	14.5	2	100	0	58	51	0	0	48	1.00
55842--55904	32	2.0	32	100	0	126	47	20	3	28	1.65
64182--64222	21	1.9	22	85	5	57	43	29	17	9	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64423--64486	31	2.0	31	82	8	76	35	32	20	10	1.87
67120--67181	29	2.1	29	82	5	72	40	3	11	45	1.56
73582--73691	58	1.9	58	85	7	152	32	13	18	35	1.90

Tables:   1

The End!