Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022032.1 Corchorus olitorius cultivar O-4 contig22065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45463
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Found at i:463 original size:24 final size:23
Alignment explanation
Indices: 431--476 Score: 83
Period size: 24 Copynumber: 2.0 Consensus size: 23
421 ACGTTTGCAC
431 AAATACCTAAGAATTTGAATTAAA
1 AAATACCTAAGAATTT-AATTAAA
455 AAATACCTAAGAATTTAATTAA
1 AAATACCTAAGAATTTAATTAA
477 TGTAAGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (23 bp):
AAATACCTAAGAATTTAATTAAA
Found at i:526 original size:39 final size:40
Alignment explanation
Indices: 467--547 Score: 128
Period size: 39 Copynumber: 2.0 Consensus size: 40
457 ATACCTAAGA
* *
467 ATTTAATTAATGTAAGTATTTCAGTTATTATA-GTATTAC
1 ATTTAATTAATGTAAATATTTCAGTTATTATATATATTAC
*
506 ATTTAATTAATGTAAATATTTTAGTTATTATATATATTAC
1 ATTTAATTAATGTAAATATTTCAGTTATTATATATATTAC
546 AT
1 AT
548 AGGAATTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
39 30 0.79
40 8 0.21
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (40 bp):
ATTTAATTAATGTAAATATTTCAGTTATTATATATATTAC
Found at i:775 original size:2 final size:2
Alignment explanation
Indices: 763--828 Score: 78
Period size: 2 Copynumber: 32.5 Consensus size: 2
753 AATTTAGACT
* * *
763 TA TA TA GTA TA TA TA TA TA TA TA TA GA TA TA AA TA TA GA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
806 AA TA TA GA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
829 TTATTGTTGG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
2 51 0.96
3 2 0.04
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (2 bp):
TA
Found at i:2104 original size:25 final size:24
Alignment explanation
Indices: 2049--2105 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 24
2039 GTCAGCCTTG
*
2049 AATTT-TTTAATGTTTAATTCTTA
1 AATTTATTTAATGTTTAATTATTA
* *
2072 AATTTATTTAATGTCTTTATTATTC
1 AATTTATTTAATGT-TTAATTATTA
2097 AATTTATTT
1 AATTTATTT
2106 TACAATCCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 5 0.17
24 8 0.28
25 16 0.55
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (24 bp):
AATTTATTTAATGTTTAATTATTA
Found at i:7026 original size:49 final size:47
Alignment explanation
Indices: 6950--7053 Score: 145
Period size: 49 Copynumber: 2.2 Consensus size: 47
6940 CAAGCAACCC
* **
6950 TTTACTTTTACTGCACTTTTTCTCAATTTTTACTACAAAATTGAACT
1 TTTAATTTTACTGCACTTTTTCTCAATTTTTAAGACAAAATTGAACT
* *
6997 TTTAATTTTACTTGCATTTTTTTCTCAATTTTTAAGACAAAATTGATCT
1 TTTAATTTTAC-TGCA-CTTTTTCTCAATTTTTAAGACAAAATTGAACT
7046 TTTAATTT
1 TTTAATTT
7054 CCATCGCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
47 10 0.20
48 4 0.08
49 36 0.72
ACGTcount: A:0.28, C:0.14, G:0.05, T:0.53
Consensus pattern (47 bp):
TTTAATTTTACTGCACTTTTTCTCAATTTTTAAGACAAAATTGAACT
Found at i:7067 original size:49 final size:49
Alignment explanation
Indices: 6962--7067 Score: 135
Period size: 49 Copynumber: 2.2 Consensus size: 49
6952 TACTTTTACT
** * *
6962 GCAC-TTTTTCTCAATTTTTACTACAAAATTGAACTTTTAATTTTACTT
1 GCACTTTTTTCTCAATTTTTAAGACAAAATTGAACTTTTAATTTCACTC
* *
7010 GCATTTTTTTCTCAATTTTTAAGACAAAATTGATCTTTTAATTTC-CATC
1 GCACTTTTTTCTCAATTTTTAAGACAAAATTGAACTTTTAATTTCAC-TC
7059 GCACTTTTT
1 GCACTTTTT
7068 ATTAATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.08
49 45 0.92
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (49 bp):
GCACTTTTTTCTCAATTTTTAAGACAAAATTGAACTTTTAATTTCACTC
Found at i:8777 original size:17 final size:17
Alignment explanation
Indices: 8755--8808 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
8745 CCAAAACTTA
8755 ATAATTACCTGTGGAGG
1 ATAATTACCTGTGGAGG
* *
8772 ATAATTA--T-TTGA-T
1 ATAATTACCTGTGGAGG
*
8785 ACAATTACCTGTGGAGG
1 ATAATTACCTGTGGAGG
8802 ATAATTA
1 ATAATTA
8809 TTTGATACAC
Statistics
Matches: 27, Mismatches: 6, Indels: 8
0.66 0.15 0.20
Matches are distributed among these distances:
13 6 0.22
14 3 0.11
15 2 0.07
16 3 0.11
17 13 0.48
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (17 bp):
ATAATTACCTGTGGAGG
Found at i:8793 original size:30 final size:30
Alignment explanation
Indices: 8757--8817 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
8747 AAAACTTAAT
8757 AATTACCTGTGGAGGATAATTATTTGATAC
1 AATTACCTGTGGAGGATAATTATTTGATAC
8787 AATTACCTGTGGAGGATAATTATTTGATAC
1 AATTACCTGTGGAGGATAATTATTTGATAC
8817 A
1 A
8818 CTGTCGTTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (30 bp):
AATTACCTGTGGAGGATAATTATTTGATAC
Found at i:11830 original size:21 final size:24
Alignment explanation
Indices: 11801--11851 Score: 72
Period size: 22 Copynumber: 2.2 Consensus size: 24
11791 ATTTGAACTC
11801 ATTATT-TATTATTTAA-AATATAT
1 ATTATTAT-TTATTTAATAATATAT
11824 -TTATTATTTATTTAATAATATAT
1 ATTATTATTTATTTAATAATATAT
11847 ATTAT
1 ATTAT
11852 ATCTAAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.52
23 8 0.32
24 4 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTATTATTTATTTAATAATATAT
Found at i:11846 original size:25 final size:25
Alignment explanation
Indices: 11801--11849 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11791 ATTTGAACTC
*
11801 ATTATTTATTATTTAAAATATATTT
1 ATTATTTATTATATAAAATATATTT
*
11826 ATTATTTATT-TAATAATATATATT
1 ATTATTTATTAT-ATAAAATATATT
11850 ATATCTAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTATTTATTATATAAAATATATTT
Found at i:18405 original size:16 final size:16
Alignment explanation
Indices: 18375--18404 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18365 CATTGCTCTC
18375 TTTTTGTTTGTTTTTG
1 TTTTTGTTTGTTTTTG
18391 TTTTTGTTT-TTTTT
1 TTTTTGTTTGTTTTT
18405 TTTGTGTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (16 bp):
TTTTTGTTTGTTTTTG
Found at i:21792 original size:69 final size:67
Alignment explanation
Indices: 21620--21809 Score: 262
Period size: 67 Copynumber: 2.8 Consensus size: 67
21610 AATTAAATGA
* * * * *
21620 CATTAATACTAATTGATTTTAATTTGATCAATAT-TCAAATC-AATCAATCAATCAATCAATTTA
1 CATTAGTACTAATTGATTCTAATTGGATCAAAATAT--ATTCAAATCAATCAATCAATCAATTTA
21683 ATAT
64 ATAT
*
21687 CATTAGTACTAATTGATTCTAATTGGATC--AAGATATTCAAATCAATCAATCAATCAATTTAAT
1 CATTAGTACTAATTGATTCTAATTGGATCAAAATATATTCAAATCAATCAATCAATCAATTTAAT
21750 AT
66 AT
21752 CATTTTAGTACTAATTGATTCTAATTGGATCAAAATATATTCAAATCAATCAATCAAT
1 CA--TTAGTACTAATTGATTCTAATTGGATCAAAATATATTCAAATCAATCAATCAAT
21810 TTAATATATA
Statistics
Matches: 110, Mismatches: 7, Indels: 10
0.87 0.06 0.08
Matches are distributed among these distances:
64 3 0.03
65 29 0.26
66 1 0.01
67 53 0.48
69 24 0.22
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.38
Consensus pattern (67 bp):
CATTAGTACTAATTGATTCTAATTGGATCAAAATATATTCAAATCAATCAATCAATCAATTTAAT
AT
Found at i:21932 original size:2 final size:2
Alignment explanation
Indices: 21919--21953 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
21909 TATAGTTTTA
*
21919 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21954 CAATCAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:25592 original size:84 final size:85
Alignment explanation
Indices: 25451--25742 Score: 369
Period size: 84 Copynumber: 3.4 Consensus size: 85
25441 AATAATAGAT
* ** *
25451 AATTGCCCCTGTGTTATATTTGTGTTTGGGGACTTTGATA-GAGCTGCC-CTTGTGTTATAAATG
1 AATTGTCCCTGTGTTATAAATGTGTTTGGGGACTTTGATATGA-ATGCCTC-TGTGTTATAAATG
25514 TGCTTGAGGACTTTTAG-AGAG
64 TGCTTGAGGACTTTTAGAAGAG
* * *
25535 AATTGTCCATGTGTTATAAACGTGTTTGGGGACTTTGGTATGAATGCCTCTGTGTTATAAATGTG
1 AATTGTCCCTGTGTTATAAATGTGTTTGGGGACTTTGATATGAATGCCTCTGTGTTATAAATGTG
25600 CTTGAGGACTTTT-GAAGAG
66 CTTGAGGACTTTTAGAAGAG
* * * * * **
25619 AATATTGCCCCTGTATTATAATTGTGTCTGGGGACATTGATATGGGTGCCTCTGTGTTATAAATG
1 -A-ATTGTCCCTGTGTTATAAATGTGTTTGGGGACTTTGATATGAATGCCTCTGTGTTATAAATG
25684 TGCTTGAGGAC-TTTAGAAAGAG
64 TGCTTGAGGACTTTTAG-AAGAG
*
25706 AATTGTCCCTGTGTTATAAGTGTGTTTGGGGACTTTG
1 AATTGTCCCTGTGTTATAAATGTGTTTGGGGACTTTG
25743 GTTATTGTGT
Statistics
Matches: 179, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
83 1 0.01
84 70 0.39
85 38 0.21
86 65 0.36
87 5 0.03
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.38
Consensus pattern (85 bp):
AATTGTCCCTGTGTTATAAATGTGTTTGGGGACTTTGATATGAATGCCTCTGTGTTATAAATGTG
CTTGAGGACTTTTAGAAGAG
Found at i:25609 original size:41 final size:42
Alignment explanation
Indices: 25451--25744 Score: 156
Period size: 41 Copynumber: 6.9 Consensus size: 42
25441 AATAATAGAT
* ** * * *
25451 AATTGCCCCTGTGTTATATTTGTGTTTGGGGACTTTGATA-G
1 AATTGCCTCTGTGTTATAAATGTGCTTGAGGACTTTGGTATG
**
25492 AGCTGCC-CTTGTGTTATAAATGTGCTTGAGGACTTTTAGAG-A-G
1 AATTGCCTC-TGTGTTATAAATGTGCTTGAGGAC-TTT-G-GTATG
* * * *
25535 AATTGTCC-ATGTGTTATAAACGTGTTTGGGGACTTTGGTATG
1 AATTG-CCTCTGTGTTATAAATGTGCTTGAGGACTTTGGTATG
* * *
25577 AA-TGCCTCTGTGTTATAAATGTGCTTGAGGACTTTTGAAGAG
1 AATTGCCTCTGTGTTATAAATGTGCTTGAGGACTTTGGTA-TG
* * * * * *
25619 AATATTGCCCCTGTATTATAATTGTG-TCTGGGGACATTGATATG
1 -A-ATTGCCTCTGTGTTATAAATGTGCT-TGAGGACTTTGGTATG
** ** *
25663 -GGTGCCTCTGTGTTATAAATGTGCTTGAGGACTTTAGAAAGAG
1 AATTGCCTCTGTGTTATAAATGTGCTTGAGGACTTT-GGTA-TG
* * *
25706 AATTGTCC-CTGTGTTATAAGTGTGTTTGGGGACTTTGGT
1 AATTG-CCTCTGTGTTATAAATGTGCTTGAGGACTTTGGT
25745 TATTGTGTAA
Statistics
Matches: 190, Mismatches: 45, Indels: 34
0.71 0.17 0.13
Matches are distributed among these distances:
40 4 0.02
41 81 0.43
42 14 0.07
43 30 0.16
44 32 0.17
45 29 0.15
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.38
Consensus pattern (42 bp):
AATTGCCTCTGTGTTATAAATGTGCTTGAGGACTTTGGTATG
Found at i:25678 original size:86 final size:86
Alignment explanation
Indices: 25451--25742 Score: 380
Period size: 86 Copynumber: 3.4 Consensus size: 86
25441 AATAATAGAT
* *
25451 AATTGCCCCTGTGTTATATTTGTGTTTGGGGACTTTGATA-GAGCTGCC-CTTGTGTTATAAATG
1 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATG-GATGCCTC-TGTGTTATAAATG
25514 TGCTTGAGGACTTTT--AGAGAG
64 TGCTTGAGGACTTTTGAAGAGAG
* * ** * *
25535 AATTGTCCATGTGTTATAAACGTGTTTGGGGACTTTGGTATGAATGCCTCTGTGTTATAAATGTG
1 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATGGATGCCTCTGTGTTATAAATGTG
25600 CTTGAGGACTTTTGAAGAGA-
66 CTTGAGGACTTTTGAAGAGAG
* * * *
25620 ATATTGCCCCTGTATTATAATTGTGTCTGGGGACATTGATATGGGTGCCTCTGTGTTATAAATGT
1 A-ATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATGGATGCCTCTGTGTTATAAATGT
*
25685 GCTTGAGGACTTTAGAA-AGAG
65 GCTTGAGGACTTTTGAAGAGAG
* *
25706 AATTGTCCCTGTGTTATAAGTGTGTTTGGGGACTTTG
1 AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTG
25743 GTTATTGTGT
Statistics
Matches: 178, Mismatches: 24, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
84 66 0.37
85 37 0.21
86 75 0.42
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.38
Consensus pattern (86 bp):
AATTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATGGATGCCTCTGTGTTATAAATGTG
CTTGAGGACTTTTGAAGAGAG
Found at i:37681 original size:17 final size:15
Alignment explanation
Indices: 37640--37681 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
37630 GAAAGTACTA
37640 TGATTTTAAATGTGT
1 TGATTTTAAATGTGT
37655 TGATTTTAAATGTGT
1 TGATTTTAAATGTGT
37670 TGCATCTTTAAA
1 TG-AT-TTTAAA
37682 AGGCTCTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 17 0.68
16 2 0.08
17 6 0.24
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.50
Consensus pattern (15 bp):
TGATTTTAAATGTGT
Found at i:38853 original size:17 final size:18
Alignment explanation
Indices: 38792--38852 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 18
38782 ATATAATAAC
38792 TAAAATACTTACATTAAT
1 TAAAATACTTACATTAAT
38810 TAAATGTAATACTATA-ATT-AT
1 T-AA---AATACT-TACATTAAT
*
38831 TGAAATACTTACATTAAT
1 TAAAATACTTACATTAAT
38849 TAAA
1 TAAA
38853 TTCTTAGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
16 2 0.06
17 9 0.26
18 6 0.18
19 2 0.06
20 1 0.03
21 3 0.09
22 9 0.26
23 2 0.06
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.39
Consensus pattern (18 bp):
TAAAATACTTACATTAAT
Found at i:39332 original size:203 final size:203
Alignment explanation
Indices: 38965--39376 Score: 738
Period size: 203 Copynumber: 2.0 Consensus size: 203
38955 TTCCTTAATA
*
38965 ATAAAGAAATCGGATCTTAATATCTTTTATAATTTTGAAATTTTGTTTGGCATTGATCTAATTTA
1 ATAAAGAAATCGGATCTTAATATCTTTTATAATTTTGAAATTTTGTTTGACATTGATCTAATTTA
*
39030 ATTTAATAAATCAACCACTAATGTTCAACTAATTTTCTTTGGTATAGTTCTATATATATAATAGT
66 ATTTAATAAATCAACCACTAATGTTCAACTAATTTTCTTTGGTATAGTTCTATATATATAATAAT
*
39095 AATGTGTTGTATCTTATTCACTACAACTTTGTTAGTGATCTTAGACTTAAAAAATTAATAACATT
131 AATGTGTTGTATCTTATTCACTACAACTTTGTTAGTAATCTTAGACTTAAAAAATTAATAACATT
39160 CACCATTG
196 CACCATTG
*
39168 ATAAATAAATCGGATCTTTAATATCTTTTATAATTTTGAAATTTTGTTTGACATTGATCTAATTT
1 ATAAAGAAATCGGATC-TTAATATCTTTTATAATTTTGAAATTTTGTTTGACATTGATCTAATTT
* *
39233 AATTTAATAAATCAACCACTAATGTTCAACTACTTTTTTTTTGGTATAGTT-T-TATATATAATA
65 AATTTAATAAATCAACCACTAATGTTCAACTA-ATTTTCTTTGGTATAGTTCTATATATATAATA
39296 ATAATGTGTTGTATCTTATTCACTACAACTTTGTTAGTAATCTTAGACTTAAAAAATTAATAACA
129 ATAATGTGTTGTATCTTATTCACTACAACTTTGTTAGTAATCTTAGACTTAAAAAATTAATAACA
39361 TTCACCATTG
194 TTCACCATTG
39371 ATAAAG
1 ATAAAG
39377 TTATTAAGCA
Statistics
Matches: 200, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
203 104 0.52
204 80 0.40
205 16 0.08
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.43
Consensus pattern (203 bp):
ATAAAGAAATCGGATCTTAATATCTTTTATAATTTTGAAATTTTGTTTGACATTGATCTAATTTA
ATTTAATAAATCAACCACTAATGTTCAACTAATTTTCTTTGGTATAGTTCTATATATATAATAAT
AATGTGTTGTATCTTATTCACTACAACTTTGTTAGTAATCTTAGACTTAAAAAATTAATAACATT
CACCATTG
Found at i:40243 original size:13 final size:12
Alignment explanation
Indices: 40225--40269 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 12
40215 ATTTTATTAC
40225 TGTTTTATTAAAT
1 TGTTTTA-TAAAT
40238 TGTTTTATAAAT
1 TGTTTTATAAAT
*
40250 GGTTTTAAATAAAT
1 TGTTTT--ATAAAT
40264 TGTTTT
1 TGTTTT
40270 GGGTGCATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 10 0.36
13 7 0.25
14 11 0.39
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58
Consensus pattern (12 bp):
TGTTTTATAAAT
Found at i:41564 original size:36 final size:36
Alignment explanation
Indices: 41517--41586 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
41507 GAGATTTTGG
* *
41517 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
1 AGAAATATGATAACCAAAATCACAAAAAATGTAATA
*
41553 AGAAATATGATAACCAAAATCACAAAAGATGTAA
1 AGAAATATGATAACCAAAATCACAAAAAATGTAA
41587 GGTTATTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.60, C:0.09, G:0.10, T:0.21
Consensus pattern (36 bp):
AGAAATATGATAACCAAAATCACAAAAAATGTAATA
Done.