Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022033.1 Corchorus olitorius cultivar O-4 contig22066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14168

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2125--2205
32
2.6
32
86
2
110
38
14
11
35
1.82
2123--2202
31
2.5
31
85
2
106
40
15
10
35
1.80
2302--2339
18
2.0
19
90
10
60
39
0
5
55
1.23
2892--2971
31
2.6
31
87
0
124
41
11
15
32
1.82
3090--3129
19
2.1
19
100
0
80
10
20
20
50
1.76
4621--4705
18
4.9
18
74
8
77
9
7
65
17
1.43
4626--4665
21
1.9
21
89
0
62
7
7
65
20
1.43
4625--4668
15
2.9
15
82
0
52
6
6
65
20
1.39
6880--6961
24
3.2
24
66
15
65
24
4
51
19
1.66
8415--8449
11
3.2
11
91
0
61
80
17
2
0
0.84
11959--12016
22
2.7
22
81
5
66
34
37
8
18
1.82
12044--12087
22
2.0
23
86
4
63
18
29
9
43
1.80

Tables:   1

The End!