Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022035.1 Corchorus olitorius cultivar O-4 contig22068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6926
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:4086 original size:91 final size:91

Alignment explanation


    Indices: 3931--4111  Score: 353
    Period size: 91  Copynumber: 2.0  Consensus size: 91

       3921 AAAGAATGCA

                                                    *                        
       3931 AAAGTAGCAAACGATCTCGAATTTAATGAAAATTTCACCAGTAGGCTTAGAATATCTCTATAAGA
          1 AAAGTAGCAAACGATCTCGAATTTAATGAAAATTTCACCACTAGGCTTAGAATATCTCTATAAGA

                                      
       3996 TCATGGAAAAAATCCCAAGTTAATTG
         66 TCATGGAAAAAATCCCAAGTTAATTG

                                                                             
       4022 AAAGTAGCAAACGATCTCGAATTTAATGAAAATTTCACCACTAGGCTTAGAATATCTCTATAAGA
          1 AAAGTAGCAAACGATCTCGAATTTAATGAAAATTTCACCACTAGGCTTAGAATATCTCTATAAGA

                                     
       4087 TCATGGAAAAAATCCCAAGTTAATT
         66 TCATGGAAAAAATCCCAAGTTAATT

       4112 CGAGCTCTCT


Statistics
Matches: 89,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  91   89  1.00

ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28


Consensus pattern (91 bp):   
AAAGTAGCAAACGATCTCGAATTTAATGAAAATTTCACCACTAGGCTTAGAATATCTCTATAAGA
TCATGGAAAAAATCCCAAGTTAATTG
Done.