Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022036.1 Corchorus olitorius cultivar O-4 contig22069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84809

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
543--602
21
2.9
21
92
0
93
31
20
30
18
1.96
6663--6691
9
3.2
9
100
0
58
37
20
31
10
1.86
8308--8391
36
2.3
36
95
0
150
20
45
2
32
1.64
11957--12301
111
3.1
111
96
0
647
24
23
24
27
2.00
15466--15491
13
2.0
13
100
0
52
53
30
0
15
1.42
30197--30248
19
2.8
20
74
11
56
48
1
0
50
1.12
30653--30709
29
2.0
29
100
0
114
36
24
10
28
1.88
33559--33584
11
2.4
11
100
0
52
7
15
7
69
1.35
34674--34740
35
2.0
35
85
5
93
34
10
7
47
1.66
36814--36847
6
5.7
6
85
0
50
2
11
2
82
0.89
47322--47400
41
1.9
41
97
0
149
39
21
13
25
1.90
49611--49656
22
2.1
22
95
0
83
43
4
34
17
1.69
51406--51459
17
3.2
17
78
19
58
24
24
16
35
1.95
51680--51743
30
2.2
28
88
5
92
45
4
1
48
1.32
51689--51750
29
2.2
28
83
13
76
50
4
0
45
1.23
51801--51861
11
5.5
11
78
16
56
55
21
9
13
1.66
52572--52613
16
2.6
16
96
0
75
38
40
14
7
1.73
52823--52870
14
3.3
14
78
16
53
54
4
0
41
1.20
53414--53460
13
3.8
12
78
13
51
40
0
4
55
1.19
53593--53642
17
3.0
17
79
2
57
26
54
18
2
1.54
53633--53673
15
2.7
15
84
3
55
39
41
14
4
1.67
55491--55956
178
2.7
172
82
4
537
33
15
15
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58623--58689
33
2.0
33
100
0
134
38
11
16
32
1.85
68747--68789
14
3.1
14
93
0
77
41
27
13
16
1.86
69001--69060
30
2.0
30
100
0
120
33
20
16
30
1.94
74358--74460
51
2.0
51
83
3
127
22
22
15
39
1.91
82386--82418
17
1.9
17
88
11
50
33
18
12
36
1.88
83524--83597
22
3.3
21
76
14
60
72
0
18
8
1.08

Tables:   1

The End!