genome.fa.s22038.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022038.1 Corchorus olitorius cultivar O-4 contig22071, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143708

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3948--3987	18	2.2	18	95	0	71	25	42	5	27	1.75
8400--8471	2	37.0	2	71	27	50	43	5	1	50	1.34
8400--8454	9	5.9	9	81	12	58	43	5	0	50	1.25
8400--8472	13	5.5	13	78	18	64	42	5	1	50	1.34
8409--8479	13	5.2	13	81	18	83	40	7	1	50	1.38
9275--9322	24	2.0	24	83	0	60	25	16	4	54	1.60
12391--12425	17	1.9	19	88	11	56	77	0	20	2	0.90
13203--13273	27	2.6	27	90	0	115	18	28	19	33	1.95
22261--22323	32	2.0	32	93	0	108	6	30	0	63	1.19
22417--22471	24	2.3	23	90	3	83	34	7	41	16	1.76
25762--26566	400	2.0	400	95	0	1432	30	14	22	32	1.93
42422--42472	22	2.3	22	93	6	86	62	7	5	23	1.44
42511--42541	2	15.5	2	100	0	62	51	0	0	48	1.00
46283--46434	76	2.0	76	84	5	200	17	28	28	25	1.97
53476--53677	58	3.5	58	96	0	350	17	17	23	41	1.90
53465--53677	29	7.4	28	82	7	257	17	17	23	41	1.90
58234--58284	10	5.6	9	77	13	50	80	3	5	9	1.01
64300--64342	18	2.5	17	81	7	59	48	13	9	27	1.73
65087--65154	35	1.9	35	85	5	93	38	25	5	30	1.79
90407--90473	27	2.5	27	90	4	100	20	47	11	19	1.81
90576--90643	26	2.6	26	83	6	75	58	1	4	35	1.27
90620--90673	17	3.2	16	80	12	56	53	5	7	33	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91823--91851	2	14.5	2	100	0	58	48	0	0	51	1.00
91976--92039	24	2.7	23	85	4	74	32	9	4	53	1.54
99407--99450	22	2.0	23	86	8	65	25	20	31	22	1.98
113206--113296	31	3.2	31	61	30	74	37	21	17	23	1.94
113187--113296	55	2.0	55	98	0	211	39	20	16	23	1.92
113185--113272	26	3.3	26	64	30	67	40	19	15	23	1.90
113670--113695	13	2.0	13	100	0	52	15	0	30	53	1.42
121099--121123	11	2.3	11	100	0	50	12	36	8	44	1.71
124454--124498	21	2.1	21	83	0	54	28	31	22	17	1.97
127242--127290	21	2.3	21	82	6	55	40	16	28	14	1.87
142698--142744	26	1.9	23	87	12	67	40	4	27	27	1.75

Tables:   1

The End!