Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002204.1 Corchorus olitorius cultivar O-4 contig02204, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 990

Length: 1650
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32


Found at i:1022 original size:19 final size:19

Alignment explanation


    Indices: 998--1034  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        988 TTGCCCCTCT

                                
        998 TCTCTCTCC-CTCCACTAAG
          1 TCTCTCTCCTC-CCACTAAG

                              
       1017 TCTCTCTCCTCCCACTAA
          1 TCTCTCTCCTCCCACTAA

       1035 CTCCCTTATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  19   16  0.94
  20    1  0.06

ACGTcount: A:0.16, C:0.49, G:0.03, T:0.32


Consensus pattern (19 bp):   
TCTCTCTCCTCCCACTAAG
Done.