Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022040.1 Corchorus olitorius cultivar O-4 contig22073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17620

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2052--2100
21
2.3
21
82
6
55
14
28
16
40
1.87
5032--5091
25
2.4
25
97
0
111
10
25
18
46
1.79
5399--5513
41
2.8
41
92
2
178
48
14
13
22
1.79
6058--6087
2
15.0
2
100
0
60
0
50
0
50
1.00
6630--6665
17
2.1
17
89
5
54
2
22
0
75
0.94
6774--6808
17
2.1
17
89
5
54
11
34
5
48
1.63
10812--10861
23
2.2
23
92
7
84
52
8
10
30
1.64
13657--13702
21
2.1
21
84
4
56
17
47
17
17
1.83
14270--14302
16
2.1
16
94
0
57
39
21
6
33
1.78
16164--16189
11
2.4
11
100
0
52
7
15
7
69
1.35
17444--17619
50
3.6
49
85
2
201
21
27
11
39
1.88

Tables:   1

The End!